Supplementary
Information for
"Modeling T-cell Activation Using Gene
Expression Profiling and State Space Models",
Authors: C. Rangel, J. Angus, Z. Ghahramani, M. Liuomi, E. Sotheran, A. Gaiba, D.L.
Wild and F. Falciani
Bioinformatics 2004
Boxplots of all replicates for each time
point, before and after quantile normalization.
Profiles of genes 1-58 before
normalization. Experiment 1 is shown in red (34 replicates), experiment 2 in
blue (10 replicates).
Profiles of genes 1-58 after quantile
normalization. Experiment 1 is shown in red (34 replicates) ,
experiment 2 in blue (10 replicates).
Standardized innovations of genes
1-58.
Histograms of the estimated
standardized innovations of genes 1-58.
A fitted normal density is superimposed in red.
Q-Q
plots of the estimated standardized innovations of genes 1-58.
The y-axis represents the innovation quantiles and the x-axis quantiles of a
standard normal distribution
Figure 7: Table of gene names