Of Interest:
1. SBW/BioSPICE
2. Collaborators
3. Resume
3. Analog Computers
4. Jim Burns' Thesis
Software Downloads:
1. SBW
2. JDesigner
3. Jarnac
4. WinSCAMP
5. Matlab Interface
6. Optimization
6. Bifurcation
maintained by Herbert M. Sauro
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JDesigner: A Biochemical Network Layout Tool
Program Downloads
JDesigner 1.9g newest version
JDesigner 1.7
Documentation
JDesigner (PDF)
SBW Interface (PDF)
SBML for JDesigner (PDF)
JDesigner Tutorial (PDF)
Sample Models
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JDesigner is a Win32 application which allows one to draw a biochemical network
and export the network in the form of SBML. The Designer has an SBW interface that
allows it to be called from other SBW compliant modules, for example Python. In addition,
JDesigner has the ability to use Jarnac as a simulation server (via SBW) thus allowing
models to be run from within JDesigner. In this mode JDesigner is both a network design
tool and simulator. Full binaries and source code is available in the download.
JDesigner is an Open Source Project distributed under the LGPL license.
Development of JDesigner was supported by the Kitano ERATO project at Caltech and more recently
by the Keck Graduate Institute.
Notices
YOU MUST USE THE LATEST JARNAC 2.0 for versions 1.8+. When you install Jarnac make sure you RE-REGISTER Jarnac with SBW. Go to the options menu and select register with SBW. Then QUIT and RESTART SBW. To restart SBW, stop it first then restart it (see System Biology Workbench menu in start menu).
Version History
Screen Shots
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